Many robustness improvements for error and interrupt handling:

- Introduce proof-shell-error-or-interrupt-seen flag set after an error
or interrupt was seen (in fact, on every call to proof-release-lock).
Examine it in proof-activate-scripting to see whether hooks succeeded
in activating scripting.
- Test in the shell filter for the lock being held yet nothing in the
action list, and clear the lock if so.  Gets rid of repetetive
proof-shell-busy messages when the queue is empty (for errors during
development, or nasty uses of C-g)
- Add a timeout to proof-shell-wait  (not used yet)

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