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diff --git a/Makefile b/Makefile
--- a/Makefile
+++ b/Makefile
@@ -82,8 +82,8 @@ endif
COMPCERTDIRS=lib common $(ARCHDIRS) cfrontend flocq exportclight $(BACKEND)
-COMPCERT_R_FLAGS= $(foreach d, $(COMPCERTDIRS), -R $(COMPCERT)/$(d) compcert.$(d))
-EXTFLAGS= $(foreach d, $(COMPCERTDIRS), -Q $(COMPCERT)/$(d) compcert.$(d))
+COMPCERT_R_FLAGS= $(foreach d, $(COMPCERTDIRS), -R $(COMPCERT)/$(d) VST.compcert.$(d))
+EXTFLAGS= $(foreach d, $(COMPCERTDIRS), -Q $(COMPCERT)/$(d) VST.compcert.$(d))
# for ITrees
ifeq ($(wildcard InteractionTrees/the?ries),"InteractionTrees/theories")
EXTFLAGS:=$(EXTFLAGS) -Q InteractionTrees/theories ITree
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