[refman] Move chapters into new structure.

As a first step toward a deeper refactoring of the reference manual,
we move existing chapters into a new structure.

We use the Sphinx support for top-level chapters spanning multiple
pages to consolidate existing chapters into a smaller number of
chapters and a smaller number of parts.

Now the full top-level table of content can be seen in one glance.
Most of the new chapters are divided into several sub-chapters (on
separate pages) that correspond to the pre-existing chapters.  These
new top-level chapters gathering several chapters together have gained
a new introduction.  The main introduction has been rewritten /
simplified as well.

For now, the URL of pre-existing chapters does not change.  The intent
is to further refactor the manual by splitting some of these
sub-chapters into smaller ones, and by moving things around.

While the sub-chapters are likely to evolve very much in the future,
the top-level table of content is almost final (except that the "Using
Coq" part may gain one or two additional chapters on proof engineering
/ project management).

Thanks to Jim Fehrle for investigating how to split a chapter on
multiple pages and to both Jim and Matthieu Sozeau for the discussion
that led to this new structure.

See also the related CEP: https://github.com/coq/ceps/pull/43

Additional notes:

- A new directory structure has been created reflecting the new
  chapter structure.

- The indexes chapter has been removed from the PDF version since it
  wasn't working.

Co-authored-by: Jim Fehrle <jfehrle@sbcglobal.net>

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