* remove all deprecations, switch to new API.

* Add MemLibOutConfigFileAnnotation to replace ConfWriter.

* Inline CreateMemoryAnnotations in ReplSeqMem.

* Dont use ConfWriter anymore.

* Fix ReplSeqMemTests, rewrite checkMemConf to directly read from annoation.

* Fix for review.

0. Since DependencyAPI only initiate transform only once, ListBuffer is
   dangerous to use, remove defAnnotatedMemories from Transform.
1. Add trait HasAnnotatedMemories to store ListBuffer,
   MemLibOutConfigFileAnnotation also extends from which now.

* Use two annotations converting and storing DefMemory.

0. rewrite CreateMemoryAnnotations to match ReplSeqMemAnnotation
   creating PinAnnotation.
1. add DumpMemoryAnnotations to convert from
   AnnotatedMemoriesCollectorAnnotation to MemLibOutConfigFileAnnotation
2. refactor MemLibOutConfigFileAnnotation and remove
   HasAnnotatedMemories
3. add private AnnotatedMemoriesCollectorAnnotation to store mutable
   DefAnnotatedMemory
4. change ReplSeqMem to SeqTransform

* Fix for review.

0. replace AnnotatedMemoriesCollectorAnnotation with immutable
   AnnotatedMemoriesAnnotation.
1. add ListBuffer[DefAnnotatedMemory] in ReplaceMemMacros.execute.

* private functions in ReplaceMemMacros transform.

* scalafmt

* remove ConfWriter API.